6Y2G Crystal structure (orthorhombic form) of the complex resulting from the reaction between SARS-CoV-2 (2019-nCoV) main protease and tert-butyl (1-((S)-1-(((S)-4-(benzylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-3-cyclopropyl-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate (alpha-ketoamide 13b) date
authors Zhang, L., Lin, D., Sun, X., Hilgenfeld, R.
compound source
symmetry
R_factor
R_Free 0.2473
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand GLY, O6K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (6y2g.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 6Y2G
  • CSU: Contacts of Structural Units for 6Y2G
  • Structure Factors (1540 Kb)
  • Retrieve 6Y2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y2G from S2C, [Save to disk]
  • View 6Y2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y2G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6y2g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y2g_BBB] [6y2g_B] [6y2g_AAA] [6y2g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y2G
  • Community annotation for 6Y2G at PDBWiki (http://pdbwiki.org)

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