6Y41 Immune System date Feb 19, 2020
title Fibrinogen-Like Globe Domain Of Human Angptl2
authors J.A.Coker, T.Krojer, J.M.Mutisya, C.H.Arrowsmith, C.Bountra, K.S. W.W.Yue, B.D.Marsden, Structural Genomics Consortium (Sgc)
compound source
Molecule: Angiopoietin-Related Protein 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Angiopoietin-Like Protein 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Angptl2, Arp2, Unq170pro196
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cydisco
symmetry Space Group: P 21 2 21
R_factor 0.192 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.940 154.860 172.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand CA, EDO, TRS enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1116 Kb) [Save to disk]
  • Biological Unit Coordinates (6y41.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (6y41.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (6y41.pdb3.gz) 78 Kb
  • Biological Unit Coordinates (6y41.pdb4.gz) 77 Kb
  • Biological Unit Coordinates (6y41.pdb5.gz) 79 Kb
  • Biological Unit Coordinates (6y41.pdb6.gz) 78 Kb
  • Biological Unit Coordinates (6y41.pdb7.gz) 77 Kb
  • Biological Unit Coordinates (6y41.pdb8.gz) 77 Kb
  • Biological Unit Coordinates (6y41.pdb9.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 6Y41
  • CSU: Contacts of Structural Units for 6Y41
  • Structure Factors (10431 Kb)
  • Retrieve 6Y41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y41 from S2C, [Save to disk]
    • View 6Y41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Y41
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y41_F] [6y41_H] [6y41_K] [6y41_B] [6y41_G] [6y41_O] [6y41_L] [6y41_A] [6y41_I] [6y41_J] [6y41_M] [6y41_C] [6y41_D] [6y41_P] [6y41_E] [6y41_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Y41
  • Community annotation for 6Y41 at PDBWiki (http://pdbwiki.org)

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