6Y42 Transcription date Feb 19, 2020
title Crystal Structure Of Rsrr Complexed To A 39 Basepair Dna Fra The Rsrr Promoter
authors A.Volbeda, J.C.Fontecilla-Camps
compound source
Molecule: Rrf2 Family Transcriptional Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Streptomyces Venezuelae (Strain Atcc 1 Cbs 650.69 Dsm 40230 Jcm 4526 Nbrc 13096 Pd 04745);
Organism_taxid: 953739
Atcc: 10712
Gene: Sven_6563
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_cell_line: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgs-21a

Molecule: Dna (39-Mer)
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Venezuelae Atcc 10712
Organism_taxid: 953739

Molecule: Dna (39-Mer)
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Venezuelae Atcc 10712
Organism_taxid: 953739
symmetry Space Group: P 61 2 2
R_factor 0.267 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
197.370 197.370 73.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.30 Å
ligand FES enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (6y42.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 6Y42
  • CSU: Contacts of Structural Units for 6Y42
  • Structure Factors (88 Kb)
  • Retrieve 6Y42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y42 from S2C, [Save to disk]
    • View 6Y42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Y42
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y42_A] [6y42_E] [6y42_F] [6y42_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Y42
  • Community annotation for 6Y42 at PDBWiki (http://pdbwiki.org)

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