6Y4P Membrane Protein date Feb 21, 2020
title Calmodulin N53i Variant Bound To Cardiac Ryanodine Receptor Calmodulin Binding Domain
authors K.Lau, L.H.Nielsen, C.Holt, M.Brohus, A.B.Sorensen, K.T.Larsen, C. F.Van Petegem, M.T.Overgaard, R.Wimmer
compound source
Molecule: Calmodulin-1
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ryanodine Receptor 2
Chain: B
Synonym: Ryr2,Cardiac Muscle Ryanodine Receptor,Cardiac Mus Ryanodine Receptor-Calcium Release Channel,Type 2 Ryanodine
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ryr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.590 42.360 90.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe arrhythmogenic N53I variant subtly changes the structure and dynamics in the calmodulin N-domain, altering its interaction with the cardiac ryanodine receptor., Holt C, Hamborg L, Lau K, Brohus M, Sorensen AB, Larsen KT, Sommer C, Van Petegem F, Overgaard MT, Wimmer R, J Biol Chem. 2020 Apr 21. pii: RA120.013430. doi: 10.1074/jbc.RA120.013430. PMID:32317284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (6y4p.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 6Y4P
  • CSU: Contacts of Structural Units for 6Y4P
  • Structure Factors (294 Kb)
  • Retrieve 6Y4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y4P from S2C, [Save to disk]
  • View 6Y4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y4P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y4p_A] [6y4p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y4P
  • Community annotation for 6Y4P at PDBWiki (http://pdbwiki.org)

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