6Y76 Cytosolic Protein date Feb 28, 2020
title Ap01 - A Redesigned Transferrin Receptor Apical Domain
authors G.Oberdorfer, S.A.Berger, S.Bjelic, D.J.Sjostrom
compound source
Molecule: Transferrin Receptor Protein 1
Chain: A, B
Synonym: Trfr,T9,P90
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tfrc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.234 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.122 119.558 33.167 90.00 112.25 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand NA enzyme
Primary referenceComputational backbone design enables soluble engineering of transferrin receptor apical domain., Sjostrom DJ, Berger SA, Oberdorfer G, Bjelic S, Proteins. 2020 Jun 26. doi: 10.1002/prot.25974. PMID:32592192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6y76.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (6y76.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 6Y76
  • CSU: Contacts of Structural Units for 6Y76
  • Structure Factors (136 Kb)
  • Retrieve 6Y76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y76 from S2C, [Save to disk]
    • View 6Y76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Y76
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y76_A] [6y76_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Y76
  • Community annotation for 6Y76 at PDBWiki (http://pdbwiki.org)

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