6YBI Hydrolase date Mar 17, 2020
title Rt Structure Of Hew Lysozyme Obtained At 1.12 A Resolution F Crystal Grown In A Mylar Microchip.
authors J.A.Gavira, S.Martinez-Rodriguez
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.133 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.170 79.170 37.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.12 Å
ligand CL, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAttaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips., Gavira JA, Rodriguez-Ruiz I, Martinez-Rodriguez S, Basu S, Teychene S, McCarthy AA, Mueller-Dieckman C, Acta Crystallogr D Struct Biol. 2020 Aug 1;76(Pt 8):751-758. doi:, 10.1107/S2059798320008475. Epub 2020 Jul 27. PMID:32744257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6ybi.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 6YBI
  • CSU: Contacts of Structural Units for 6YBI
  • Structure Factors (1053 Kb)
  • Retrieve 6YBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YBI from S2C, [Save to disk]
  • View 6YBI in 3D
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  • Visual 3D analysis of 6YBI
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ybi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ybi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YBI
  • Community annotation for 6YBI at PDBWiki (http://pdbwiki.org)

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