6YBO RT structure of Glucose Isomerase obtained at 1.06 A resolution from crystal grown in a Kapton microchip. date
authors Gavira, J.A., Martinez-Rodriguez, S.
compound source
symmetry
R_factor
R_Free 0.1310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.06
ligand MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAttaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips., Gavira JA, Rodriguez-Ruiz I, Martinez-Rodriguez S, Basu S, Teychene S, McCarthy AA, Mueller-Dieckman C, Acta Crystallogr D Struct Biol. 2020 Aug 1;76(Pt 8):751-758. doi:, 10.1107/S2059798320008475. Epub 2020 Jul 27. PMID:32744257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (6ybo.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 6YBO
  • CSU: Contacts of Structural Units for 6YBO
  • Structure Factors (5498 Kb)
  • Retrieve 6YBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YBO from S2C, [Save to disk]
    • View 6YBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6YBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ybo from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ybo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6YBO
  • Community annotation for 6YBO at PDBWiki (http://pdbwiki.org)

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