6YBV Translation date Mar 17, 2020
title Structure Of A Human 48s Translational Initiation Complex -
authors J.Brito Querido, M.Sokabe, S.Kraatz, Y.Gordiyenko, M.Skehel, C.Fr V.Ramakrishnan
compound source
Molecule: Eukaryotic Translation Initiation Factor 2 Subuni
Chain: s
Synonym: Eukaryotic Translation Initiation Factor 2 Subunit 2-Beta;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 2 Subuni
Chain: r
Synonym: Eukaryotic Translation Initiation Factor 2 Subunit Eif-2alpha;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Initiator Methionine Trna
Chain: w

Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Mrna
Chain: k
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Eukaryotic Translation Initiation Factor 2 Subuni
Chain: t
Synonym: Eukaryotic Translation Initiation Factor 2 Subunit Eif-2gx;
Ec: 3.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand
enzyme Hydrolase E.C.3.6.5.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
r


s


t


Primary referenceStructure of a human 48S translational initiation complex., Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V, Science. 2020 Sep 4;369(6508):1220-1227. doi: 10.1126/science.aba4904. PMID:32883864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6ybv.pdb1.gz) 120 Kb
  • CSU: Contacts of Structural Units for 6YBV
  • Retrieve 6YBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YBV from S2C, [Save to disk]
  • View 6YBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YBV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ybv_s] [6ybv_w] [6ybv_r] [6ybv_k] [6ybv_t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YBV
  • Community annotation for 6YBV at PDBWiki (http://pdbwiki.org)

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