6YIE Cell Cycle date Apr 01, 2020
title Structure Of A Borealin-Incenp-Survivin Complex
authors M.Serena, P.R.Elliott, F.A.Barr
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 5
Chain: A, D
Synonym: Apoptosis Inhibitor 4,Apoptosis Inhibitor Survivin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc5, Api4, Iap4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus (Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet1

Molecule: Borealin
Chain: B, E
Synonym: Cell Division Cycle-Associated Protein 8,Dasra-B,H Pluripotent Embryonic Stem Cell-Related Gene 3 Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdca8, Pescrg3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus (Ril)

Molecule: Inner Centromere Protein
Chain: C, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Incenp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus (Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfat2-His6-Gst
symmetry Space Group: P 21 21 21
R_factor 0.269 R_Free 0.324
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.536 78.824 125.173 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.49 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


F, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (6yie.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (6yie.pdb2.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6YIE
  • CSU: Contacts of Structural Units for 6YIE
  • Structure Factors (272 Kb)
  • Retrieve 6YIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YIE from S2C, [Save to disk]
  • View 6YIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YIE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yie_D] [6yie_C] [6yie_F] [6yie_B] [6yie_E] [6yie_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YIE
  • Community annotation for 6YIE at PDBWiki (http://pdbwiki.org)

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