6YSK Hydrolase date Apr 22, 2020
title 1-Phenylpyrroles And 1-Enylpyrrolidines As Inhibitors Of Not
authors Y.Zhao, E.Y.Jones, P.Fish
compound source
Molecule: Palmitoleoyl-Protein Carboxylesterase Notum
Chain: A
Synonym: Hnotum
Ec: 3.1.1.98
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notum, Oksw-Cl.30
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.940 71.900 78.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.21 Å
ligand DMS, EDO, NAG, PJK, SO4 enzyme Hydrolase E.C.3.1.1.98 BRENDA
Primary referenceScreening of a Custom-Designed Acid Fragment Library Identifies 1-Phenylpyrroles and 1-Phenylpyrrolidines as Inhibitors of Notum Carboxylesterase Activity., Mahy W, Patel M, Steadman D, Woodward HL, Atkinson BN, Svensson F, Willis NJ, Flint A, Papatheodorou D, Zhao Y, Vecchia L, Ruza RR, Hillier J, Frew S, Monaghan A, Costa A, Bictash M, Walter MW, Jones EY, Fish PV, J Med Chem. 2020 Aug 18. doi: 10.1021/acs.jmedchem.0c00660. PMID:32787107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6ysk.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 6YSK
  • CSU: Contacts of Structural Units for 6YSK
  • Structure Factors (3049 Kb)
  • Retrieve 6YSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YSK from S2C, [Save to disk]
  • View 6YSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YSK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ysk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YSK
  • Community annotation for 6YSK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science