6YUO Transferase date Apr 27, 2020
title Capsule O-Acetyltransferase Of Neisseria Meningitidis Serogr Complex With Caged Gadolinium
authors J.T.Cramer, T.Fiebig, R.Fedorov, M.Muehlenhoff
compound source
Molecule: Sacc
Chain: A, B
Engineered: Yes
 Organism_scientific: Neisseria Meningitidis Serogroup A
Organism_taxid: 65699
Gene: Sacc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 41 21 2
R_factor 0.182 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.930 132.930 69.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, EDO, GD3, PEG enzyme
Primary referenceStructural and mechanistic basis of capsule O-acetylation in Neisseria meningitidis serogroup A., Fiebig T, Cramer JT, Bethe A, Baruch P, Curth U, Fuhring JI, Buettner FFR, Vogel U, Schubert M, Fedorov R, Muhlenhoff M, Nat Commun. 2020 Sep 18;11(1):4723. doi: 10.1038/s41467-020-18464-y. PMID:32948778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (6yuo.pdb1.gz) 319 Kb
  • LPC: Ligand-Protein Contacts for 6YUO
  • CSU: Contacts of Structural Units for 6YUO
  • Structure Factors (499 Kb)
  • Retrieve 6YUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YUO from S2C, [Save to disk]
    • View 6YUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6YUO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yuo_A] [6yuo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6YUO
  • Community annotation for 6YUO at PDBWiki (http://pdbwiki.org)

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