6Z1A Isomerase date May 13, 2020
title Ternary Complex Of Staphylococcus Aureus Dna Gyrase With Amk
authors A.Kolaric, T.Germe, M.Hrast, C.E.M.Stevenson, D.M.Lawson, N.Burto J.Voros, A.Maxwell, N.Minovski, M.Anderluh
compound source
Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit A
Chain: B, D
Ec: 5.6.2.2,5.6.2.2
Engineered: Yes
Mutation: Yes
Other_details: Fusion Of Fragments Taken From C-Terminal Do Gyrb (Residues 410-543 And 580-644) To N-Terminal Domain Of (Residues 2-491). For The Gyrb Component, Deletion Of Resid 579 Removes A Greek Key Motif. The Deleted Sequence Is Repl
Residues: Tg. For The Gyra Component, The Sequence Numberin Advanced By 1000 In The Coordinate File.,Fusion Of Fragment From C-Terminal Domain Of Gyrb (Residues 410-543 And 580-64 Terminal Domain Of Gyra (Residues 2-491). For The Gyrb Comp Deletion Of Residues 544-579 Removes A Greek Key Motif. The
Sequence Is Replaced By 2 Residues: Tg. For The Gyra Compon Sequence Numbering Is Advanced By 1000 In The Coordinate Fi Of Fragments Taken From C-Terminal Domain Of Gyrb (Residues And 580-644) To N-Terminal Domain Of Gyra (Residues 2-491). Gyrb Component, Deletion Of Residues 544-579 Removes A Gree
Motif. The Deleted Sequence Is Replaced By 2 Residues: Tg. Gyra Component, The Sequence Numbering Is Advanced By 1000 Coordinate File.,Fusion Of Fragments Taken From C-Terminal Gyrb (Residues 410-543 And 580-644) To N-Terminal Domain Of (Residues 2-491). For The Gyrb Component, Deletion Of Resid 579 Removes A Greek Key Motif. The Deleted Sequence Is Repl
Residues: Tg. For The Gyra Component, The Sequence Numberin Advanced By 1000 In The Coordinate File.;
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Gyrb, Gyra
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Apgpcpcpgptpapg)-3')
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3
Organism_taxid: 158879

Molecule: Dna (5'-D(Pgptpapcpcptpapcpgpgpcpt)-3
Chain: G, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3
Organism_taxid: 158879
symmetry Space Group: P 61
R_factor 0.179 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.592 92.592 405.464 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, DMS, EPE, MN, Q52 enzyme Isomerase E.C.5.6.2.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]
  • Biological Unit Coordinates (6z1a.pdb1.gz) 466 Kb
  • LPC: Ligand-Protein Contacts for 6Z1A
  • CSU: Contacts of Structural Units for 6Z1A
  • Structure Factors (3463 Kb)
  • Retrieve 6Z1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Z1A from S2C, [Save to disk]
  • View 6Z1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Z1A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6z1a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6z1a_B] [6z1a_E] [6z1a_H] [6z1a_D] [6z1a_G] [6z1a_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Z1A
  • Community annotation for 6Z1A at PDBWiki (http://pdbwiki.org)

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