6Z1A	Isomerase	date	May 13, 2020
title	Ternary Complex Of Staphylococcus Aureus Dna Gyrase With Amk
authors	A.Kolaric, T.Germe, M.Hrast, C.E.M.Stevenson, D.M.Lawson, N.Burto J.Voros, A.Maxwell, N.Minovski, M.Anderluh
compound		source
Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit A Chain: B, D Ec: 5.6.2.2,5.6.2.2 Engineered: Yes Mutation: Yes Other_details: Fusion Of Fragments Taken From C-Terminal Do Gyrb (Residues 410-543 And 580-644) To N-Terminal Domain Of (Residues 2-491). For The Gyrb Component, Deletion Of Resid 579 Removes A Greek Key Motif. The Deleted Sequence Is Repl Residues: Tg. For The Gyra Component, The Sequence Numberin Advanced By 1000 In The Coordinate File.,Fusion Of Fragment From C-Terminal Domain Of Gyrb (Residues 410-543 And 580-64 Terminal Domain Of Gyra (Residues 2-491). For The Gyrb Comp Deletion Of Residues 544-579 Removes A Greek Key Motif. The Sequence Is Replaced By 2 Residues: Tg. For The Gyra Compon Sequence Numbering Is Advanced By 1000 In The Coordinate Fi Of Fragments Taken From C-Terminal Domain Of Gyrb (Residues And 580-644) To N-Terminal Domain Of Gyra (Residues 2-491). Gyrb Component, Deletion Of Residues 544-579 Removes A Gree Motif. The Deleted Sequence Is Replaced By 2 Residues: Tg. Gyra Component, The Sequence Numbering Is Advanced By 1000 Coordinate File.,Fusion Of Fragments Taken From C-Terminal Gyrb (Residues 410-543 And 580-644) To N-Terminal Domain Of (Residues 2-491). For The Gyrb Component, Deletion Of Resid 579 Removes A Greek Key Motif. The Deleted Sequence Is Repl Residues: Tg. For The Gyra Component, The Sequence Numberin Advanced By 1000 In The Coordinate File.;		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Gyrb, Gyra Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Dna (5'-D(Apgpcpcpgptpapg)-3') Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3 Organism_taxid: 158879
Molecule: Dna (5'-D(Pgptpapcpcptpapcpgpgpcpt)-3 Chain: G, H Engineered: Yes		Synthetic: Yes Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3 Organism_taxid: 158879
symmetry	Space Group: P 61	R_factor 0.179 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.592 92.592 405.464 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, DMS, EPE, MN, Q52	enzyme	Isomerase E.C.5.6.2.2 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk] Biological Unit Coordinates (6z1a.pdb1.gz) 466 Kb LPC: Ligand-Protein Contacts for 6Z1A CSU: Contacts of Structural Units for 6Z1A Structure Factors (3463 Kb) Retrieve 6Z1A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6Z1A from S2C, [Save to disk]

View 6Z1A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6Z1A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6z1a_B] [6z1a_E] [6z1a_H] [6z1a_D] [6z1a_G] [6z1a_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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