6Z2G Immune System date May 15, 2020
title Crystal Structure Of Human Nlrp9 Pyd
authors M.Marleaux, K.Anand, M.Geyer
compound source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 9
Chain: A
Synonym: Nucleotide-Binding Oligomerization Domain Protein And Nacht-Containing Protein 12;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlrp9, Nalp9, Nod6, Pan12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t1
symmetry Space Group: P 65 2 2
R_factor 0.216 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.330 33.330 311.091 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
Primary referenceCrystal structure of the human NLRP9 pyrin domain suggests a distinct mode of inflammasome assembly., Marleaux M, Anand K, Latz E, Geyer M, FEBS Lett. 2020 Jun 16. doi: 10.1002/1873-3468.13865. PMID:32542665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (6z2g.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 6Z2G
  • Structure Factors (146 Kb)
  • Retrieve 6Z2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Z2G from S2C, [Save to disk]
    • View 6Z2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Z2G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6z2g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Z2G
  • Community annotation for 6Z2G at PDBWiki (http://pdbwiki.org)

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