6Z3R	Transferase	date	May 21, 2020
title	Structure Of Smg1-8-9 Kinase Complex Bound To Upf1-Lsq
authors	L.M.Langer, Y.Gat, E.Conti
compound		source
Molecule: Serinethreonine-Protein Kinase Smg1,Serinethreo Protein Kinase Smg1,Smg1,Serinethreonine-Protein Kinase Sm Serinethreonine-Protein Kinase Smg1,Serinethreonine-Prote Smg1; Chain: A Synonym: Hsmg-1,61e3.4,Lambdaiota Protein Kinase C-Interac Protein,Lambda-Interacting Protein,Hsmg-1,61e3.4,Lambdaiot Kinase C-Interacting Protein,Lambda-Interacting Protein,Hsm 61e3.4,Lambdaiota Protein Kinase C-Interacting Protein,Lam Interacting Protein,Hsmg-1,61e3.4,Lambdaiota Protein Kinas Interacting Protein,Lambda-Interacting Protein,Hsmg-1,61e3. Lambdaiota Protein Kinase C-Interacting Protein,Lambda-Int Protein; Ec: 2.7.11.1,2.7.11.1,2.7.11.1,2.7.11.1,2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smg1, Atx, Kiaa0421, Lip Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Protein Smg8 Chain: B Synonym: Amplified In Breast Cancer Gene 2 Protein,Protein Homolog; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smg8, Abc2, C17orf71 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Protein Smg9 Chain: C Synonym: Protein Smg-9 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smg9, C19orf61 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Regulator Of Nonsense Transcripts 1 Chain: E Synonym: Atp-Dependent Helicase Rent1,Nonsense Mrna Reducin 1,Norf1,Up-Frameshift Suppressor 1 Homolog,Hupf1; Ec: 3.6.4.- Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	2.97 Å
ligand	ANP, ATP, IHP, MG	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A B C
Primary reference	Structure of substrate-bound SMG1-8-9 kinase complex reveals molecular basis for phosphorylation specificity., Langer LM, Gat Y, Bonneau F, Conti E, Elife. 2020 May 29;9. pii: 57127. doi: 10.7554/eLife.57127. PMID:32469312

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (655 Kb) [Save to disk] Biological Unit Coordinates (6z3r.pdb1.gz) 621 Kb LPC: Ligand-Protein Contacts for 6Z3R CSU: Contacts of Structural Units for 6Z3R Retrieve 6Z3R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6Z3R from S2C, [Save to disk]

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Visual 3D analysis of 6Z3R

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6z3r_C] [6z3r_A] [6z3r_B] [6z3r_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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