6ZCE Ribosome date Jun 10, 2020
title Structure Of A Yeast Abce1-Bound 43s Pre-Initiation Complex
authors H.Kratzat, T.Mackens-Kiani, J.Cheng, O.Berninghausen, T.Becker, R
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: l
Synonym: Eif3i,Eukaryotic Translation Initiation Factor 3 3 Subunit,Eif3 P39;
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: r
Synonym: Eif3g,Eukaryotic Translation Initiation Factor 3 R Subunit,Eif-3 Rna-Binding Subunit,Translation Initiation Fa P33 Subunit,Eif3 P33;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 18s Ribosomal Rna (1719-Mer)
Chain: A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S0-A
Chain: B
Synonym: Nucleic Acid-Binding Protein Nab1a,Small Ribosomal Protein Us2-A;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S1-A
Chain: C
Synonym: Rp10a,Small Ribosomal Subunit Protein Es1-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S2
Chain: D
Synonym: Omnipotent Suppressor Protein Sup44,Rp12,S4,Small Subunit Protein Us5,Ys5;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S3
Chain: E
Synonym: Rp13,Small Ribosomal Subunit Protein Us3,Ys3
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S4-A
Chain: F
Synonym: Rp5,S7,Small Ribosomal Subunit Protein Es4-A,Ys6
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S5
Chain: G
Synonym: Rp14,S2,Small Ribosomal Subunit Protein Us7,Ys8
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S6-A
Chain: H
Synonym: Rp9,S10,Small Ribosomal Subunit Protein Es6-A,Ys4
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S7-A
Chain: I
Synonym: Rp30,Rp40,Small Ribosomal Subunit Protein Es7-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S8-A
Chain: J
Synonym: Rp19,S14,Small Ribosomal Subunit Protein Es8-A,Ys9
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S9-A
Chain: K
Synonym: Rp21,S13,Small Ribosomal Subunit Protein Us4-A,Yp2
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S10-A
Chain: L
Synonym: Small Ribosomal Subunit Protein Es10-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S11-A
Chain: M
Synonym: Rp41,S18,Small Ribosomal Subunit Protein Us17-A,Ys
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S12
Chain: N
Synonym: Small Ribosomal Subunit Protein Es12
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S13
Chain: O
Synonym: S27a,Small Ribosomal Subunit Protein Us15,Ys15
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S14-A
Chain: P
Synonym: Rp59a,Small Ribosomal Subunit Protein Us11-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S15
Chain: Q
Synonym: Rig Protein,Rp52,S21,Small Ribosomal Subunit Prote Ys21;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S16-A
Chain: R
Synonym: Rp61r,Small Ribosomal Subunit Protein Us9-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S17-A
Chain: S
Synonym: Rp51a,Small Ribosomal Subunit Protein Es17-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S18-A
Chain: T
Synonym: Small Ribosomal Subunit Protein Us13-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S19-A
Chain: U
Synonym: Rp55a,S16a,Small Ribosomal Subunit Protein Es19-A, Ys16a;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S20
Chain: V
Synonym: Small Ribosomal Subunit Protein Us10
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S21-A
Chain: W
Synonym: S26,Small Ribosomal Subunit Protein Es21-A,Ys25
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S22-A
Chain: X
Synonym: Rp50,S24,Small Ribosomal Subunit Protein Us8-A,Yp5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S23-A
Chain: Y
Synonym: Rp37,S28,Small Ribosomal Subunit Protein Us12-A,Ys
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S24-A
Chain: Z
Synonym: Rp50,Small Ribosomal Subunit Protein Es24-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S25-A
Chain: a
Synonym: Rp45,S31,Small Ribosomal Subunit Protein Es25-A,Ys
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S26-A
Chain: b
Synonym: Small Ribosomal Subunit Protein Es26-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S27-A
Chain: c
Synonym: Rp61,Small Ribosomal Subunit Protein Es27-A,Ys20
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S28-B
Chain: d
Synonym: S33,Small Ribosomal Subunit Protein Es28-B,Ys27
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S29-A
Chain: e
Synonym: S36,Small Ribosomal Subunit Protein Us14-A,Ys29
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S30-A
Chain: f
Synonym: Small Ribosomal Subunit Protein Es30-A
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Ubiquitin-40s Ribosomal Protein S31
Chain: g
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Guanine Nucleotide-Binding Protein Subunit Beta-L Protein;
Chain: h
Synonym: Receptor For Activated C Kinase,Receptor Of Activa Protein Kinase C 1,Rack1,Small Ribosomal Subunit Protein Ra
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: o
Synonym: Eif3a,Eukaryotic Translation Initiation Factor 3 1 Subunit Homolog,Eif3 P110,Translation Initiation Factor Eif Subunit Homolog;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: p
Synonym: Eif3b,Cell Cycle Regulation And Translation Initia Protein,Eukaryotic Translation Initiation Factor 3 90 Kda S Eif3 P90,Translation Initiation Factor Eif3 P90 Subunit;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: q
Synonym: Eif3c,Eukaryotic Translation Initiation Factor 3 9 Subunit,Eif3 P93,Nuclear Transport Protein Nip1,Translation Initiation Factor Eif3,P93 Subunit;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 1a
Chain: I
Synonym: Eif-1a,Eukaryotic Translation Initiation Factor 4c
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor Eif-1
Chain: m
Synonym: Protein Translation Factor Sui1
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: t, s
Synonym: Eif3j,Eukaryotic Translation Initiation Factor 3 3 Subunit,Eif-3 30 Kda;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Rna Recognition Motif (Unknown)
Chain: j
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: Translation Initiation Factor Rli1
Chain: k
Synonym: Atp-Binding Cassette Sub-Family E Member Rli1,Rnas Inhibitor
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.30 Å
ligand ADP, ATP, MG, SF4, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1482 Kb) [Save to disk]
  • Biological Unit Coordinates (6zce.pdb1.gz) 1400 Kb
  • LPC: Ligand-Protein Contacts for 6ZCE
  • CSU: Contacts of Structural Units for 6ZCE
  • Retrieve 6ZCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZCE from S2C, [Save to disk]
    • View 6ZCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ZCE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zce_Q] [6zce_V] [6zce_Z] [6zce_b] [6zce_B] [6zce_E] [6zce_O] [6zce_i] [6zce_k] [6zce_r] [6zce_P] [6zce_a] [6zce_A] [6zce_c] [6zce_H] [6zce_s] [6zce_F] [6zce_d] [6zce_j] [6zce_N] [6zce_D] [6zce_e] [6zce_M] [6zce_R] [6zce_p] [6zce_J] [6zce_C] [6zce_Y] [6zce_L] [6zce_f] [6zce_m] [6zce_q] [6zce_T] [6zce_X] [6zce_h] [6zce_K] [6zce_t] [6zce_l] [6zce_o] [6zce_W] [6zce_G] [6zce_I] [6zce_g] [6zce_S] [6zce_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ZCE
  • Community annotation for 6ZCE at PDBWiki (http://pdbwiki.org)

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