6ZGI Furin Cleaved Spike Protein of SARS-CoV-2 in Closed Conformation date
authors Wrobel, A.G., Benton, D.J., Rosenthal, P.B., Gamblin, S.J.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand NAG enzyme
Primary referenceSARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects., Wrobel AG, Benton DJ, Xu P, Roustan C, Martin SR, Rosenthal PB, Skehel JJ, Gamblin SJ, Nat Struct Mol Biol. 2020 Jul 9. pii: 10.1038/s41594-020-0468-7. doi:, 10.1038/s41594-020-0468-7. PMID:32647346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (500 Kb) [Save to disk]
  • Biological Unit Coordinates (6zgi.pdb1.gz) 477 Kb
  • LPC: Ligand-Protein Contacts for 6ZGI
  • CSU: Contacts of Structural Units for 6ZGI
  • Retrieve 6ZGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZGI from S2C, [Save to disk]
  • View 6ZGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ZGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zgi_C] [6zgi_B] [6zgi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ZGI
  • Community annotation for 6ZGI at PDBWiki (http://pdbwiki.org)

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