6ZK2 Hydrolase date Jun 29, 2020
title Plant Nucleoside Hydrolase - Zmnrh2b In Complex With Forodes
authors S.Morera, A.Vigouroux, D.Kopecny
compound source
Molecule: Pyrimidine-Specific Ribonucleoside Hydrolase Riha
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
Gene: 542168, Zeammb73_zm00001d031958
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.920 148.980 88.510 90.00 102.40 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, DMS, EDO, IMH, PEG, PGE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (427 Kb) [Save to disk]
  • Biological Unit Coordinates (6zk2.pdb1.gz) 206 Kb
  • Biological Unit Coordinates (6zk2.pdb2.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 6ZK2
  • CSU: Contacts of Structural Units for 6ZK2
  • Structure Factors (493 Kb)
  • Retrieve 6ZK2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZK2 from S2C, [Save to disk]
  • View 6ZK2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ZK2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zk2_D] [6zk2_A] [6zk2_C] [6zk2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ZK2
  • Community annotation for 6ZK2 at PDBWiki (http://pdbwiki.org)

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