6BW5	Transferase Antibiotic	date	Dec 14, 2017
title	Human Gpt (Dpagt1) In Complex With Tunicamycin
authors	J.Yoo, A.C.Y.Kuk, E.H.Mashalidis, S.Y.Lee
compound		source
Molecule: Udp-N-Acetylglucosamine--Dolichyl-Phosphate N- Acetylglucosaminephosphotransferase; Chain: A, B, C, D Synonym: Glcnac-1-P Transferase,Gpt,N-Acetylglucosamine-1-P Transferase; Ec: 2.7.8.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpagt1, Dpagt2 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: C 1 2 1	R_factor 0.256 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 212.272 105.512 149.389 90.00 103.53 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	PGW, TUM	enzyme	Transferase E.C.2.7.8.15 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	GlcNAc-1-P-transferase-tunicamycin complex structure reveals basis for inhibition of N-glycosylation., Yoo J, Mashalidis EH, Kuk ACY, Yamamoto K, Kaeser B, Ichikawa S, Lee SY, Nat Struct Mol Biol. 2018 Mar;25(3):217-224. doi: 10.1038/s41594-018-0031-y. Epub, 2018 Feb 19. PMID:29459785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk] Biological Unit Coordinates (6bw5.pdb1.gz) 222 Kb Biological Unit Coordinates (6bw5.pdb2.gz) 222 Kb LPC: Ligand-Protein Contacts for 6BW5 CSU: Contacts of Structural Units for 6BW5 Structure Factors (394 Kb) Retrieve 6BW5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6BW5 from S2C, [Save to disk]

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Visual 3D analysis of 6BW5

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6bw5_D] [6bw5_B] [6bw5_A] [6bw5_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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