6RG2 Sugar Binding Protein date Apr 16, 2019
title Photorhabdus Laumondii Lectin Pll2 In Complex With 3-O-Methy Glucose
authors J.Houser, E.Fujdiarova, M.Wimmerova
compound source
Molecule: Lectin Pll2 From Photorhabdus Laumondii
Chain: B, A
Engineered: Yes
 Organism_scientific: Photorhabdus Laumondii Subsp. Laumondi
Organism_taxid: 243265
Gene: Plu0734
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet25-B
symmetry Space Group: P 1 21 1
R_factor 0.136 R_Free 0.161
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.646 56.708 108.477 90.00 95.33 90.00
method X-Ray Diffractionresolution 1.12 Å
ligand 3MG, ACT, NA, ZB1 enzyme
Primary referenceHeptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system., Fujdiarova E, Houser J, Dobes P, Paulikova G, Kondakov N, Kononov L, Hyrsl P, Wimmerova M, FEBS J. 2020 Jun 19. doi: 10.1111/febs.15457. PMID:32559333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (6rg2.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 6RG2
  • CSU: Contacts of Structural Units for 6RG2
  • Structure Factors (6392 Kb)
  • Retrieve 6RG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RG2 from S2C, [Save to disk]
    • View 6RG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RG2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rg2_A] [6rg2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RG2
  • Community annotation for 6RG2 at PDBWiki (http://pdbwiki.org)

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