6SUM Antimicrobial Protein date Sep 16, 2019
title Amicoumacin Kinase Hamin In Complex With Amp-Pnp, Mg2+ And A
authors G.P.Bourenkov, Y.A.Mokrushina, S.S.Terekhov, I.V.Smirnov, A.G.Ga S.Altman
compound source
Molecule: Amicoumacin Kinase
Chain: A, B
Ec: 2.7.1.230
Engineered: Yes
 Organism_scientific: Bacillus Altitudinis
Organism_taxid: 293387
Gene: Bw16_03450
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.145 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.660 66.000 70.410 112.29 102.81 94.79
method X-Ray Diffractionresolution 1.35 Å
ligand ACT, ANP, MG, UAM enzyme Transferase E.C.2.7.1.230 BRENDA
Primary referenceA kinase bioscavenger provides antibiotic resistance by extremely tight substrate binding., Terekhov SS, Mokrushina YA, Nazarov AS, Zlobin A, Zalevsky A, Bourenkov G, Golovin A, Belogurov A Jr, Osterman IA, Kulikova AA, Mitkevich VA, Lou HJ, Turk BE, Wilmanns M, Smirnov IV, Altman S, Gabibov AG, Sci Adv. 2020 Jun 24;6(26):eaaz9861. doi: 10.1126/sciadv.aaz9861. eCollection, 2020 Jun. PMID:32637600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (6sum.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (6sum.pdb2.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 6SUM
  • CSU: Contacts of Structural Units for 6SUM
  • Structure Factors (4606 Kb)
  • Retrieve 6SUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SUM from S2C, [Save to disk]
    • View 6SUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6SUM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sum_B] [6sum_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6SUM
  • Community annotation for 6SUM at PDBWiki (http://pdbwiki.org)

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