6YO1 Hydrolase date Apr 14, 2020
title Crystal Structure Of Ribonuclease A Solved By Vanadium Sad P
authors K.El Omari, N.Mohamad, K.Bountra, R.Duman, M.Romano, K.Schlegel, H V.Mykhaylyk, C.E.Olesen, J.V.Moller, M.Bublitz, K.Beis, A.Wagner
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Rnase 1,Rnase A
Ec: 4.6.1.18
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Rnase1, Rns1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.510 32.660 72.400 90.00 90.83 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand UVC enzyme Lyase E.C.4.6.1.18 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (6yo1.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (6yo1.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 6YO1
  • CSU: Contacts of Structural Units for 6YO1
  • Structure Factors (917 Kb)
  • Retrieve 6YO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YO1 from S2C, [Save to disk]
  • View 6YO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YO1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yo1_A] [6yo1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YO1
  • Community annotation for 6YO1 at PDBWiki (http://pdbwiki.org)

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