7ADC Transcription date Sep 14, 2020
title Transcription Termination Intermediate Complex 3 Delta Nusg
authors N.Said, T.Hilal, B.Loll, C.M.Wahl
compound source
Molecule: Transcription Termination Factor Rho
Chain: f, a, b, c, d, e
Synonym: Atp-Dependent Helicase Rho
Ec: 3.6.4.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rho, Ac789_1c41660, Acn002_3874, El75_4398, El79_4648 El80_4555;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Terminationantitermination Protein
Chain: A
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Nusa, A6581_13525, A8c65_02280, A9819_18195, A9r57_12 A9x72_02950, Ac789_1c35390, Acn002_3262, Acn68_12470, Acn81 Acu57_14555, Acu90_11675, Aj318_05130, Am270_15620, Am464_0 Am465_07745, Amk83_06450, Aml35_13995, Arc77_12295, Au473_0 Auq13_02965, Aw059_15285, Awb10_02965, Awe53_007755, Awf59_ Awg78_015835, Azz83_001443, B6v57_17910, B7c53_06460, B9n33 Banra_01789, Banra_03826, Bb545_09890, Bfd68_02465, Bhf03_0 Bhf46_07205, Bhs87_17855, Biq87_17925, Biu72_05295, Biz41_1 Bjj90_02880, Bk373_10285, Bk375_17175, Bk383_15855, Bmt91_0 Bn17_31141, Boh76_04800, Bon63_14350, Bon65_19800, Bon66_12 Bon69_26670, Bon71_25285, Bon72_14050, Bon75_23260, Bon76_0 Bon94_12450, Bon95_22130, Bon96_06470, Btq04_16590, Btq06_1 Bue81_19575, Bvcms12bk_01027, Bvcms2454_04844, Bvcms28bk_03 Bvcms35bk_01521, Bvcmsc61a_01481, Bvcmshhp001_01224, Bvcmshhp019_03131, Bvcmshhp056_02506, Bvcmskkp036_00266, Bvcmskkp061_00866, Bvcmsksnp073_02140, Bvcmsksnp081_00264, Bvcmsksnp120_03552, Bvcmsksp011_02072, Bvcmsksp024_00305, Bvcmsksp026_00480, Bvcmsksp045_01628, Bvcmsksp058_01862, Bvcmsksp067_01442, Bvcmsksp076_01608, Bvcmsnsnp036_02129, Bvcmsnsp006_04618, Bvcmsnsp007_02229, Bvcmsnsp047_04140, Bvcmsoup014_03610, Bvcmssinp011_04480, Bvcmssinp022_03541, Bvcmssip019_00385, Bvcmssip044_00115, Bw690_05715, Bwi89_22 Bwp17_10040, Bxt93_11865, Bzl31_05810, C2u48_17660, C4k41_0 C5n07_18180, C5p44_00540, C7b06_16690, C7b07_10710, C9098_0 C9114_15345, C9162_04220, C9e25_11380, C9e67_03485, C9z23_0 C9z28_00495, C9z29_07080, C9z37_14770, C9z39_14385, C9z69_1 C9z70_06875, C9z78_03425, Ccz14_12145, Ccz17_15255, Cf006_1 Cg692_07185, Ci693_03560, Ci694_20950, Cig45_16160, Cmr93_0 Co706_14520, Cod46_10645, Cr538_03185, Cr539_21135, Crd98_0 Crm83_23610, Crt43_19205, Ct146_02945, Cub99_16245, Cvh05_1 D2184_10395, D2185_00555, D3821_08435, D3c88_08620, D3o91_0 D3y67_18400, D4m06_11115, D6x76_04225, D7k63_12110, D7y10_0 D9d20_06165, D9d31_09845, D9d33_00520, D9e34_10725, D9e35_0 D9e49_09485, D9f17_07090, D9g42_16790, D9h53_01085, D9h68_0 D9h70_01530, D9i18_07065, D9i87_04950, D9i88_16540, D9i97_1 D9j11_01020, D9j44_07740, D9j46_20540, D9j78_05020, D9k54_1 D9l99_02550, Dah26_17205, Dah30_12985, Dah34_01870, Dah37_0 Dah43_16670, Dd762_19130, Den89_09295, Den97_16025, Deo04_1 Deo19_06320, Dj487_12875, Dj503_10865, Dl455_12590, Dl545_0 Dmi04_04160, Dmz50_12310, Dn627_01240, Dn700_04485, Dnb37_1 Dnr41_11075, Doy56_12135, Dp258_01950, Dqf57_03505, Dqo13_0 Ds732_23585, Ds966_19180, Dtl43_04185, Dtl90_07460, Dtm10_0 Du333_16810, Dw236_11975, Dxt69_05630, Dxt71_00550, Dxt73_1 Dxx80_009480, E0i42_14230, E0l04_19775, E2119_05760, E2127_ E2128_02605, E2129_05650, E2134_15705, E2135_07970, E5p22_1 E5p28_13020, E5p37_13245, E5s42_11905, E5s47_02870, E5s61_0 Ea223_04935, Ea250_06525, Ea834_14925, Eai42_15045, Eai52_1 Eax79_13120, Eb509_07090, Eb510_12295, Ec1094v2_475, Ec3234a_53c00480, Ec382_14545, Ecs4050, Ecto124_00620, Ecto Ed225_04160, Ed607_10315, Ed611_04170, Ed648_02805, Ef173_1 Egt48_12340, Ei021_03955, Ei028_15160, Ei032_08695, Eia21_0 Eiz93_15765, El75_0516, El79_0538, El80_0529, Elt20_05155, Elt23_06875, Elt33_08795, Elt34_10430, Elt48_07010, Elu82_0 Elu96_15075, Elv05_02165, Elv13_06455, Elv24_06465, Elx79_0 Elx83_01985, Ely05_03160, Ely23_12925, Ely24_06185, Ely50_1 Eo241_09470, Eps76_01475, Eps94_08345, Ept01_00525, Eq825_1 Ers085365_00562, Ers085374_01906, Ers085379_00395, Ers08538 Ers085386_00510, Ers085404_02209, Ers085406_02909, Ers08541 Ers139211_00573, Ers150873_04324, Ewk56_02885, Exm29_19885, Expecsc065_00153, Exx06_09580, Exx13_07225, Exx55_08945, Exx71_13290, Exx78_16840, Exx87_04480, Eyd11_02755, Eyx82_0 Eyx99_26665, Eyy34_08675, F1e19_22155, F7f18_01095, F7g01_1 F7g03_16260, Fko60_06130, Fnj67_03685, Forc82_0590, Fq915_1 Fqr64_03145, Fqu83_04620, Frv13_20655, Fv293_08485, Fv438_1 Fy127_14855, Fz043_21925, Hmcms184_00231, Hmcmsjml079_04422 Hmcmsjml146_01153, Hmcmsjml204_02228, Hw43_20805, Mj49_1445 Ms8345_03518, Nctc10089_00629, Nctc10090_03662, Nctc10767_0 Nctc10865_00813, Nctc10974_00712, Nctc11022_03334, Nctc1112 Nctc11341_01740, Nctc13127_00931, Nctc8179_06097, Nctc8621_ Nctc8959_03134, Nctc9045_00717, Nctc9055_02514, Nctc9058_01 Nctc9062_02552, Nctc9075_00900, Nctc9081_01077, Nctc9111_00 Nctc9119_00655, Nctc9434_00566, Nctc9701_00709, Nctc9703_05 Nctc9706_02868, Nctc9969_00791, Pgd_03947, Pu06_19960, Rg28 Rk56_014720, Rx35_04256, Samea3472044_03332, Samea3472047_0 Samea3472055_00400, Samea3472056_03072, Samea3472080_00945, Samea3472090_00548, Samea3472108_00102, Samea3472114_00483, Samea3472147_01878, Samea3485101_01710, Samea3752553_01187, Samea3752557_01875, Samea3752559_03273, Samea3752620_02341, Samea3753064_02936, Samea3753097_03302, Samea3753164_02300, Samea3753290_00148, Samea3753300_02131, Sk85_03482, Sy51_18 U12a_03405, U14a_03402, Uc41_24435, Un86_15490, Un91_15505, Wq89_06750, Wr15_24550;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: U, V
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: W
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: X
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpob, Z5560, Ecs4910
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: Y
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoc, A6581_23995, A6592_25550, A6v01_22675, A8c65_22 A9p13_25145, A9r57_05210, A9x72_23915, Ac789_1c43830, Acn00 Acn68_05320, Acn81_23175, Acu57_23185, Acu90_26200, Am270_2 Am446_26250, Am464_13270, Amk83_15405, Aml07_02735, Aml35_2 Apt94_08715, Apz14_17345, Arc77_17020, Au473_00845, Auq13_1 Aus26_26460, Aw059_24210, Awb10_24945, Awe53_003330, Awg90_ Azz83_004736, B7c53_21460, B9m99_23215, Banra_02658, Banra_ Banra_04874, Banra_05060, Bb545_03160, Be963_11280, Bhf03_1 Bhf46_21990, Bhs81_23830, Bhs87_22295, Biq87_22860, Biu72_1 Biz41_20460, Bjj90_25120, Bk292_28025, Bk296_22655, Bk373_2 Bk375_25315, Bk383_27720, Bmt49_21005, Bmt91_03285, Bn17_39 Boh76_00535, Bon63_20110, Bon65_15085, Bon66_14380, Bon69_0 Bon71_08940, Bon72_17275, Bon75_02240, Bon76_16220, Bon83_0 Bon87_25670, Bon91_27070, Bon92_00590, Bon94_22185, Bon95_1 Bon96_11000, Btq04_24495, Btq06_27265, Bue81_05360, Bvcms12 Bvcms2454_04769, Bvcms28bk_04518, Bvcms35bk_02095, Bvcmsc61 Bvcmshhp001_05236, Bvcmshhp019_04451, Bvcmshhp056_02607, Bvcmskkp061_02982, Bvcmsksnp073_02854, Bvcmsksnp081_04479, Bvcmsksnp120_03436, Bvcmsksp011_02756, Bvcmsksp024_02908, Bvcmsksp026_03362, Bvcmsksp045_04187, Bvcmsksp058_05144, Bvcmsksp067_02566, Bvcmsnsnp036_01157, Bvcmsnsp006_02615, Bvcmsnsp007_05019, Bvcmsnsp047_00271, Bvcmsnsp072_02893, Bvcmsoup014_03200, Bvcmssinp011_03932, Bvcmssinp022_04155, Bvcmssip019_00812, Bvcmssip044_03274, Bvl39_05360, Bw690_26 Bwi89_17380, Bwp17_22705, Bxt93_12730, Bzl31_04385, Bzl69_0 C2u48_12715, C5715_03850, C5n07_24540, C5p01_26050, C5p44_2 C7235_23705, C7b02_25785, C7b06_24625, C7b07_24550, C7b08_2 C9098_22155, C9114_22905, C9141_23610, C9160_23380, C9162_2 C9201_22200, C9306_18300, C9e25_22085, C9e67_28655, C9z03_2 C9z23_22490, C9z28_21990, C9z29_22175, C9z37_20920, C9z39_1 C9z43_22460, C9z69_21605, C9z70_22865, Ca593_06020, Cdc27_2 Cf006_23865, Ci641_013325, Ci693_09915, Ci694_22465, Cig45_ Cju63_23545, Cmr93_21720, Co706_19510, Cod30_25650, Cod46_2 Cr538_24210, Cr539_01675, Crd98_23235, Cre06_23980, Crm83_1 Crx46_23050, Cv83915_02065, Cvh05_03875, Cws33_24550, D0x26 D2184_25090, D2185_24280, D2188_26590, D3821_09095, D3822_0 D3o91_23490, D3p01_24335, D3y67_18045, D4m06_24790, D6t60_2 D6x76_25460, D7k63_24300, D7k66_23610, D9d20_23630, D9d31_1 D9d43_22315, D9e34_21770, D9e35_23870, D9f17_24240, D9g48_1 D9h53_22620, D9h68_20330, D9h70_22065, D9h94_18950, D9i18_2 D9i87_21145, D9i88_19005, D9i97_19385, D9j03_21580, D9j11_2 D9j44_24520, D9j60_24650, D9j78_24495, D9k48_24885, D9l89_2 D9x97_23575, Dah18_24925, Dah26_25940, Dah30_23845, Dah34_2 Dah37_22570, Dah43_24880, Dbq99_24540, Dd762_22280, Den89_2 Den97_23710, Deo04_24305, Deo19_24555, Div22_03745, Dj487_2 Dj503_21515, Dl455_22980, Dl545_23680, Dlw88_24480, Dm102_2 Dmi04_23195, Dn627_23155, Dn700_22970, Dnb37_22370, Dnd16_2 Doy56_23525, Dp258_23435, Dp277_21385, Dqe83_24465, Dqf57_2 Dqo13_23780, Dtl43_13700, Dtl90_24530, Dtm10_25855, Du309_2 Du321_23425, Dw236_24545, Dxt69_22805, Dxt71_22310, Dxt73_2 Dxx80_014100, E0i42_21900, E0k84_22885, E0l12_22045, E2112_ E2119_22340, E2127_20900, E2128_03185, E2129_21295, E2134_2 E2135_19330, E4k55_23345, E5p22_12650, E5p28_08825, E5p37_2 E5s42_21540, E5s47_23025, E5s58_21685, E5s61_22375, Ea223_1 Ea410_23470, Eai42_07590, Eai46_11695, Eai52_22800, Eax79_2 Eb509_19940, Eb510_23045, Eb515_23245, Ec1094v2_4282, Ec3234a_76c00080, Ec3426_00300, Ec382_20005, Ecs4911, Ecto6 Ed225_22845, Ed607_18495, Ed611_23935, Ed648_18905, Ed903_1 Ed944_23315, Eea45_21100, Eep23_09490, Ef173_24455, Ehh55_0 Ehj36_22705, Ei021_22070, Ei028_22520, Ei032_21250, Eia21_2 Eiz93_16335, Ejc75_19635, El75_4201, El79_4407, El80_4314, Elt20_20720, Elt23_22660, Elu85_23590, Elv08_18690, Elv28_2 Ely05_18165, Eo241_25775, Ept01_21680, Eq820_22870, Eq823_2 Ers085365_04275, Ers085366_03840, Ers085374_04587, Ers08537 Ers085383_04736, Ers085386_04630, Ers085404_04514, Ers08541 Ers139211_00022, Ers150873_04406, Ers150876_04849, Est51_23 Evy14_16840, Exm29_02400, Exx06_24525, Exx23_22305, Exx24_2 Exx53_21005, Exx55_24440, Exx71_22255, Exx78_24010, Exx87_2 Eyd11_21590, Eyx82_16690, Eyy34_19805, Eyy78_22660, F1e13_2 F1e19_21825, F7f11_23815, F7f18_24055, F7f29_25930, F7g01_2 F7g03_24075, Faf34_028960, Fnj69_19110, Fnj83_24800, Forc82 Fq915_26150, Fqr64_21800, Frv13_16215, Fv293_23430, Fv438_2 Fwk02_01680, Fy127_17750, Fz043_01140, Gj11_25200, Hmcms184 Hmcmsjml074_03182, Hmcmsjml079_04902, Hmcmsjml204_03257, Hmpref3040_01778, Hw43_01585, Mj49_09425, Nctc10082_02080, Nctc10090_02779, Nctc10429_00081, Nctc10865_05894, Nctc1097 Nctc11181_01964, Nctc12950_05213, Nctc13127_06163, Nctc1314 Nctc7927_05248, Nctc8500_05324, Nctc8960_02339, Nctc9036_04 Nctc9044_02305, Nctc9045_05541, Nctc9050_02817, Nctc9055_01 Nctc9058_02148, Nctc9062_03445, Nctc9077_05932, Nctc9111_04 Nctc9119_05054, Nctc9701_04995, Nctc9706_02002, Nctc9777_01 Nctc9969_04931, Pgd_00622, Pu06_15490, Rg28_25345, Rk56_017 Rx35_03755, Samea3472043_04866, Samea3472044_04873, Samea3472047_03500, Samea3472055_04947, Samea3472056_05309, Samea3472070_05093, Samea3472080_04815, Samea3472090_05006, Samea3472108_04971, Samea3472110_05082, Samea3472112_05167, Samea3472114_04967, Samea3472147_04120, Samea3484427_04984, Samea3484429_04987, Samea3484434_04725, Samea3485101_05497, Samea3485113_04495, Samea3752372_05079, Samea3752553_04905, Samea3752557_04844, Samea3752559_04855, Samea3752620_04699, Samea3753064_05329, Samea3753097_04845, Samea3753164_04786, Samea3753290_00018, Samea3753300_04884, Sk85_04319, Uc41_25 Un86_14180, Un91_25445, Wq89_24675, Wr15_01490, Ydc107_2702
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ntdna
Chain: K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Tdna
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rut Rna
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand ADP, BEF, MG, ZN enzyme Hydrolase E.C.3.6.4 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (944 Kb) [Save to disk]
  • Biological Unit Coordinates (7adc.pdb1.gz) 917 Kb
  • LPC: Ligand-Protein Contacts for 7ADC
  • CSU: Contacts of Structural Units for 7ADC
  • Retrieve 7ADC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7ADC from S2C, [Save to disk]
  • View 7ADC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7ADC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7adc_e] [7adc_c] [7adc_K] [7adc_b] [7adc_R] [7adc_U] [7adc_L] [7adc_Y] [7adc_V] [7adc_f] [7adc_A] [7adc_W] [7adc_X] [7adc_a] [7adc_d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7ADC
  • Community annotation for 7ADC at PDBWiki (http://pdbwiki.org)

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