7AT8 Gene Regulation date Oct 29, 2020
title Histone H3 Recognition By Nucleosome-Bound Prc2 Subunit Ezh2
authors K.Finogenova, C.Benda, I.B.Schaefer, S.Poepsel, M.Strauss, J.Muel
compound source
Molecule: Isoform 2 Of Histone-Lysine N-Methyltransferase E Isoform 2 Of Histone-Lysine N-Methyltransferase Ezh2,Histon N-Methyltransferase Ezh2,Isoform 2 Of Histone-Lysine N- Methyltransferase Ezh2,Isoform 2 Of Histone-Lysine N- Methyltransferase Ezh2;
Chain: A
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6,Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methyltransfer
Ec: 2.1.1.356,2.1.1.356,2.1.1.356,2.1.1.356
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ezh2, Kmt6
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Polycomb Protein Suz12
Chain: C
Synonym: Chromatin Precipitated E2f Target 9 Protein,Chet 9 Joined To Jazf1 Protein,Suppressor Of Zeste 12 Protein Homo
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Suz12, Chet9, Jjaz1, Kiaa0160
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Histone H3.2
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: E, I
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: F, J
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: G, K
Synonym: H2b1.1
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Widom601 Dna Plus Linker
Chain: T
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Widom601 Dna Plus Linker
Chain: U
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand SAH, ZN enzyme Transferase E.C.2.1.1.356 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (7at8.pdb1.gz) 285 Kb
  • LPC: Ligand-Protein Contacts for 7AT8
  • CSU: Contacts of Structural Units for 7AT8
  • Retrieve 7AT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7AT8 from S2C, [Save to disk]
  • View 7AT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7AT8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7at8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7at8_D] [7at8_U] [7at8_I] [7at8_C] [7at8_A] [7at8_K] [7at8_G] [7at8_J] [7at8_E] [7at8_H] [7at8_F] [7at8_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7AT8
  • Community annotation for 7AT8 at PDBWiki (http://pdbwiki.org)

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