7BIZ Unknown Function date Jan 13, 2021
title Structure Of A B12 Binding Lipoprotein From Bacteroides Thetaiotaomicron
authors J.Abellon-Ruiz, B.Van Den Berg
compound source
Molecule: Cell Surface Protein
Chain: A, B
Synonym: Pkd Domain Protein,Pkd-Like Domain Protein
Engineered: Yes
 Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818
Gene: Bsig_2898, Btheta7330_04243, Dw011_18555, Eh213_03063 F9z91_12155, Gag59_23440, Gan91_25070, Gao00_20505, Gao05_1 Gao06_11895, Gao10_09605, Gao29_13430, Gao30_12715, Gao37_1 Gao39_13880, Gao40_04505, Gao43_13395, Gao49_11265, Gao54_0 Gao55_10400, Gao58_08100, Gao60_13260;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.165 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.052 128.052 135.051 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.53 Å
ligand 15P, CA, CNC, MES, NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (348 Kb) [Save to disk]
  • Biological Unit Coordinates (7biz.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (7biz.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 7BIZ
  • CSU: Contacts of Structural Units for 7BIZ
  • Structure Factors (7997 Kb)
  • Retrieve 7BIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7BIZ from S2C, [Save to disk]
    • View 7BIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7BIZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7biz_A] [7biz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7BIZ
  • Community annotation for 7BIZ at PDBWiki (http://pdbwiki.org)

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