7CE1 Transcription date Jun 21, 2020
title Complex Structure Of Transcription Factor Sghr With Its Cogn
authors F.Z.Ye, C.Wang, X.F.Yan, L.H.Zhang, Y.G.Gao
compound source
Molecule: Laci-Type Transcription Factor
Chain: A, B, C, D, G, H, K, L, O, P, S, T
Engineered: Yes
Organism_scientific: Agrobacterium Tumefaciens A6
Organism_taxid: 1453998
Gene: Sghr
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Promoter Dna
Chain: a, b, c, d, g, h, k, l, o, p, s, t
Engineered: Yes

Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 358
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.900 218.960 284.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
S, A, O, T, P, K, B, H, C, D, G, L


Primary referenceStructural basis of a novel repressor SghR controlling Agrobacterium infection by cross-talking to plants., Ye F, Wang C, Fu Q, Yan XF, Bharath SR, Casanas A, Wang M, Song H, Zhang LH, Gao YG, J Biol Chem. 2020 Jul 10. pii: RA120.012908. doi: 10.1074/jbc.RA120.012908. PMID:32651231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1356 Kb) [Save to disk]
  • Biological Unit Coordinates (7ce1.pdb1.gz) 241 Kb
  • Biological Unit Coordinates (7ce1.pdb2.gz) 243 Kb
  • Biological Unit Coordinates (7ce1.pdb3.gz) 240 Kb
  • Biological Unit Coordinates (7ce1.pdb4.gz) 239 Kb
  • Biological Unit Coordinates (7ce1.pdb5.gz) 230 Kb
  • Biological Unit Coordinates (7ce1.pdb6.gz) 188 Kb
  • CSU: Contacts of Structural Units for 7CE1
  • Structure Factors (3100 Kb)
  • Retrieve 7CE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CE1 from S2C, [Save to disk]
  • View 7CE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7CE1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7ce1_K] [7ce1_B] [7ce1_d] [7ce1_G] [7ce1_L] [7ce1_a] [7ce1_g] [7ce1_b] [7ce1_A] [7ce1_H] [7ce1_C] [7ce1_p] [7ce1_l] [7ce1_o] [7ce1_D] [7ce1_T] [7ce1_S] [7ce1_P] [7ce1_t] [7ce1_s] [7ce1_k] [7ce1_h] [7ce1_O] [7ce1_c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7CE1
  • Community annotation for 7CE1 at PDBWiki (http://pdbwiki.org)

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