7CFN Membrane Protein date Jun 27, 2020
title Cryo-Em Structure Of The Int-777-Bound Gpbar-Gs Complex
authors F.Yang, C.Mao, L.Guo, J.Lin, Q.Ming, P.Xiao, X.Wu, Q.Shen, S.Guo, D.S L.Zhang, S.Huang, Y.Ping, C.Zhang, C.Ma, K.Zhang, X.Liang, Y.Shen, F.Yi, V.Luca, J.Zhou, C.Jiang, J.Sun, X.Xie, X.Yu, Y.Zhang
compound source
Molecule: Guanine Nucleotide-Binding Protein G(S) Subunit A Isoforms Short;
Chain: A
Synonym: Adenylate Cyclase-Stimulating G Alpha Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnas, Gnas1, Gsp
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Sf9

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: G
Synonym: G Gamma-I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Nanobody-35
Chain: N
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: G-Protein Coupled Bile Acid Receptor 1
Chain: R
Synonym: G-Protein Coupled Receptor Gpcr19,Hgpcr19,Membrane Receptor For Bile Acids,M-Bar,Hbg37,Bg37;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpbar1, Tgr5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Sf9
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand CLR, FX0, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • G-protein coupled acetylchol...

  • R


    Primary referenceStructural basis of GPBAR activation and bile acid recognition., Yang F, Mao C, Guo L, Lin J, Ming Q, Xiao P, Wu X, Shen Q, Guo S, Shen DD, Lu R, Zhang L, Huang S, Ping Y, Zhang C, Ma C, Zhang K, Liang X, Shen Y, Nan F, Yi F, Luca VC, Zhou J, Jiang C, Sun JP, Xie X, Yu X, Zhang Y, Nature. 2020 Jul 22. pii: 10.1038/s41586-020-2569-1. doi:, 10.1038/s41586-020-2569-1. PMID:32698187
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (7cfn.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 7CFN
  • CSU: Contacts of Structural Units for 7CFN
  • Retrieve 7CFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CFN from S2C, [Save to disk]
  • View 7CFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7CFN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7cfn_N] [7cfn_A] [7cfn_B] [7cfn_R] [7cfn_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7CFN
  • Community annotation for 7CFN at PDBWiki (http://pdbwiki.org)

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