7CRR Gene Regulation date Aug 14, 2020
title Native Nsd3 Bound To 187-Bp Nucleosome
authors W.Li, W.Tian, G.Yuan, P.Deng, O.Gozani, D.Patel, Z.Wang
compound source
Molecule: Histone H3
Chain: M, E
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: H3c8.S, H3c8, H3l, Hist1h3g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3

Molecule: Histone H2a
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3

Molecule: Histone H2b
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Tropicalis
Organism_common: Western Clawed Frog
Organism_taxid: 8364
Gene: H2bc12, Edar, Hist1h2bk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3

Molecule: Dna (168-Mer)
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna(168-Mer)
Chain: K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Histone-Lysine N-Methyltransferase Nsd3
Chain: I
Synonym: Nuclear Set Domain-Containing Protein 3,Protein Wh Whsc1-Like 1 Isoform 9 With Methyltransferase Activity To L Wolf-Hirschhorn Syndrome Candidate 1-Like Protein 1,Whsc1-L Protein 1;
Ec: 2.1.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsd3, Whsc1l1, Dc28
Expression_system: Baculovirus Transfer Vector Pfastbac1
Expression_system_taxid: 136645
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.48 Å
ligand NLE, SAM, ZN enzyme Transferase E.C.2.1.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (7crr.pdb1.gz) 319 Kb
  • LPC: Ligand-Protein Contacts for 7CRR
  • CSU: Contacts of Structural Units for 7CRR
  • Retrieve 7CRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CRR from S2C, [Save to disk]
  • View 7CRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7CRR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7crr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7crr_D] [7crr_I] [7crr_E] [7crr_M] [7crr_C] [7crr_G] [7crr_H] [7crr_A] [7crr_K] [7crr_F] [7crr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7CRR
  • Community annotation for 7CRR at PDBWiki (http://pdbwiki.org)

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