7CRR	Gene Regulation	date	Aug 14, 2020
title	Native Nsd3 Bound To 187-Bp Nucleosome
authors	W.Li, W.Tian, G.Yuan, P.Deng, O.Gozani, D.Patel, Z.Wang
compound		source
Molecule: Histone H3 Chain: M, E Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: H3c8.S, H3c8, H3l, Hist1h3g Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
Molecule: Histone H2b Chain: D, H Engineered: Yes		Organism_scientific: Xenopus Tropicalis Organism_common: Western Clawed Frog Organism_taxid: 8364 Gene: H2bc12, Edar, Hist1h2bk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
Molecule: Dna (168-Mer) Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna(168-Mer) Chain: K Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Histone-Lysine N-Methyltransferase Nsd3 Chain: I Synonym: Nuclear Set Domain-Containing Protein 3,Protein Wh Whsc1-Like 1 Isoform 9 With Methyltransferase Activity To L Wolf-Hirschhorn Syndrome Candidate 1-Like Protein 1,Whsc1-L Protein 1; Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nsd3, Whsc1l1, Dc28 Expression_system: Baculovirus Transfer Vector Pfastbac1 Expression_system_taxid: 136645
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.48 Å
ligand	NLE, SAM, ZN	enzyme	Transferase E.C.2.1.1 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk] Biological Unit Coordinates (7crr.pdb1.gz) 319 Kb LPC: Ligand-Protein Contacts for 7CRR CSU: Contacts of Structural Units for 7CRR Retrieve 7CRR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7CRR from S2C, [Save to disk]

View 7CRR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7CRR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7crr_D] [7crr_I] [7crr_E] [7crr_M] [7crr_C] [7crr_G] [7crr_H] [7crr_A] [7crr_K] [7crr_F] [7crr_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 7CRR at PDBWiki (http://pdbwiki.org)

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