7CZF Viral Protein date Sep 08, 2020
title Crystal Structure Of Kaposi Sarcoma Associated Herpesvirus ( Ghgl In Complex With The Ligand Binding Domian (Lbd) Of Eph
authors C.Su, L.L.Wu, H.Song, Y.Chai, J.X.Qi, J.H.Yan, G.F.Gao
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A, D
Synonym: Epithelial Cell Kinase,Tyrosine-Protein Kinase Rec
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2, Eck
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Envelope Glycoprotein H
Chain: B, E
Synonym: Gh
Engineered: Yes
Organism_scientific: Human Herpesvirus 8
Organism_common: Hhv-8
Organism_taxid: 37296
Gene: Orf22, Gh, Hhv8gk18_gp26
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Envelope Glycoprotein L
Chain: C, F
Synonym: Gl
Engineered: Yes
Organism_scientific: Human Herpesvirus 8
Organism_common: Hhv-8
Organism_taxid: 37296
Gene: Orf47, Gl, Orf46, Hhv8gk18_gp49
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.803 153.196 275.228 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand FUC, MAN, NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (620 Kb) [Save to disk]
  • Biological Unit Coordinates (7czf.pdb1.gz) 310 Kb
  • Biological Unit Coordinates (7czf.pdb2.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 7CZF
  • CSU: Contacts of Structural Units for 7CZF
  • Structure Factors (1470 Kb)
  • Retrieve 7CZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CZF from S2C, [Save to disk]
    • View 7CZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7CZF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7czf_D] [7czf_F] [7czf_B] [7czf_A] [7czf_E] [7czf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7CZF
  • Community annotation for 7CZF at PDBWiki (http://pdbwiki.org)

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