7D1M CRYSTAL STRUCTURE OF THE SARS-CoV-2 MAIN PROTEASE COMPLEXED WITH GC376 date
authors Fu, L.F., Gilski, M., Shabalin, I., Gao, G.F., Qi, J.X.
compound source
symmetry
R_factor
R_Free 0.1570
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand DMS, K36 enzyme
Primary referenceBoth Boceprevir and GC376 efficaciously inhibit SARS-CoV-2 by targeting its main protease., Fu L, Ye F, Feng Y, Yu F, Wang Q, Wu Y, Zhao C, Sun H, Huang B, Niu P, Song H, Shi Y, Li X, Tan W, Qi J, Gao GF, Nat Commun. 2020 Sep 4;11(1):4417. doi: 10.1038/s41467-020-18233-x. PMID:32887884
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (7d1m.pdb1.gz) 229 Kb
  • LPC: Ligand-Protein Contacts for 7D1M
  • CSU: Contacts of Structural Units for 7D1M
  • Structure Factors (3045 Kb)
  • Retrieve 7D1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D1M from S2C, [Save to disk]
  • View 7D1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7D1M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d1m_A] [7d1m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7D1M
  • Community annotation for 7D1M at PDBWiki (http://pdbwiki.org)

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