7D1M	Viral Protein	date	Sep 14, 2020
title	Crystal Structure Of The Sars-Cov-2 Main Protease Complexed
authors	L.F.Fu, M.Gilski, I.Shabalin, G.F.Gao, J.X.Qi
compound		source
Molecule: 3c-Like Proteinase Chain: A, B Synonym: 3cl-Pro,3clp,Main Protease,Mpro,Non-Structural Pro Nsp5,Sars Coronavirus Main Proteinase; Ec: 3.4.22.69 Engineered: Yes		Organism_scientific: Severe Acute Respiratory Syndrome Coro 2; Organism_common: 2019-Ncov Organism_taxid: 2697049 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
symmetry	Space Group: P 1 21 1	R_factor 0.117 R_Free 0.157
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.450 99.020 59.583 90.00 108.54 90.00
method	X-Ray Diffraction	resolution	1.35 Å
ligand	DMS, K36	enzyme	Hydrolase E.C.3.4.22.69 BRENDA
Primary reference	Both Boceprevir and GC376 efficaciously inhibit SARS-CoV-2 by targeting its main protease., Fu L, Ye F, Feng Y, Yu F, Wang Q, Wu Y, Zhao C, Sun H, Huang B, Niu P, Song H, Shi Y, Li X, Tan W, Qi J, Gao GF, Nat Commun. 2020 Sep 4;11(1):4417. doi: 10.1038/s41467-020-18233-x. PMID:32887884

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk] Biological Unit Coordinates (7d1m.pdb1.gz) 229 Kb LPC: Ligand-Protein Contacts for 7D1M CSU: Contacts of Structural Units for 7D1M Structure Factors (3045 Kb) Retrieve 7D1M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7D1M from S2C, [Save to disk]

View 7D1M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7D1M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7d1m_A] [7d1m_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 7D1M

Community annotation for 7D1M at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---