7D4A Oxidoreductase date Sep 23, 2020
title The Crystal Structure Of Human Jmjd2a Tudor Domain From Bior
authors F.Wang, Z.Lv, W.Cheng, D.Lin, C.Ju, X.Bao, B.Zhu
compound source
Molecule: Lysine-Specific Demethylase 4a
Chain: A
Synonym: Jmjc Domain-Containing Histone Demethylation Prote Jumonji Domain-Containing Protein 2a,[Histone H3]-Trimethyl Lysine(36) Demethylase 4a,[Histone H3]-Trimethyl-L-Lysine(9 Demethylase 4a;
Ec: 1.14.11.66,1.14.11.69
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kdm4a, Jhdm3a, Jmjd2, Jmjd2a, Kiaa0677
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 3 2
R_factor 0.230 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.110 135.110 135.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme Oxidoreductase E.C.1.14.11.66 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (7d4a.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 7D4A
  • CSU: Contacts of Structural Units for 7D4A
  • Structure Factors (312 Kb)
  • Retrieve 7D4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D4A from S2C, [Save to disk]
    • View 7D4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7D4A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d4a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7D4A
  • Community annotation for 7D4A at PDBWiki (http://pdbwiki.org)

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