7D9B Hydrolase date Oct 12, 2020
title Crystal Structure Of Alpha-Glucosidase
authors K.Krusong, K.Wangpaiboon, S.Kim, T.Mori, T.Hakoshima
compound source
Molecule: Alpha-Glycosidase
Chain: A
Engineered: Yes
 Organism_scientific: Weissella Cibaria
Organism_taxid: 137591
Gene: C6p22_07685
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 41 2 2
R_factor 0.145 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.503 116.503 106.638 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand CA, GOL, MES, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (7d9b.pdb1.gz) 415 Kb
  • LPC: Ligand-Protein Contacts for 7D9B
  • CSU: Contacts of Structural Units for 7D9B
  • Structure Factors (2115 Kb)
  • Retrieve 7D9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D9B from S2C, [Save to disk]
    • View 7D9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7D9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d9b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7D9B
  • Community annotation for 7D9B at PDBWiki (http://pdbwiki.org)

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