7D9C Hydrolase date Oct 13, 2020
title Alpha-Glucosidase From Weissella Cibaria Bbk-1 Bound With Ma
authors K.Krusong, K.Wangpaiboon, S.Kim, T.Mori, T.Hakoshima
compound source
Molecule: Alpha-Glycosidase
Chain: A
Engineered: Yes
Organism_scientific: Weissella Confusa
Organism_taxid: 1583
Gene: C6p08_07940
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 41 2 2
R_factor 0.140 R_Free 0.153
length a length b length c angle alpha angle beta angle gamma
115.636 115.636 106.163 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.36 Å
ligand BGC, CA, GLC, MES, SO4 enzyme Hydrolase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (7d9c.pdb1.gz) 424 Kb
  • LPC: Ligand-Protein Contacts for 7D9C
  • CSU: Contacts of Structural Units for 7D9C
  • Structure Factors (3965 Kb)
  • Retrieve 7D9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D9C from S2C, [Save to disk]
  • View 7D9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7D9C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7d9c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d9c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7D9C
  • Community annotation for 7D9C at PDBWiki (http://pdbwiki.org)

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