7ICM	Transferase Dna	date	Apr 19, 1996
title	Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Pairs Of Dna; Soaked In The Presence Of Mncl2 (1.0 Millimol
authors	H.Pelletier, M.R.Sawaya
compound		source
Molecule: Dna (5'-D(Cpaptpcptpgpt)-3') Chain: T Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cpapgpaptpg)-3') Chain: P Engineered: Yes		Synthetic: Yes
Molecule: Protein (Dna Polymerase Beta (E.C.2.7.7.7)) Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 178.467 57.755 48.512 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 7ICP, 9ICN
Gene Ontology	Chain Function Process Component A
Primary reference	A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta., Pelletier H, Sawaya MR, Wolfle W, Wilson SH, Kraut J, Biochemistry. 1996 Oct 1;35(39):12762-77. PMID:8841119

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (7icm.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 7ICM CSU: Contacts of Structural Units for 7ICM Likely Quarternary Molecular Structure file(s) for 7ICM Structure Factors (90 Kb) Retrieve 7ICM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7ICM from S2C, [Save to disk] Re-refined 7icm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 7ICM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7ICM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 7ICM, from MSDmotif at EBI Genome occurence of 7ICM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d7icma4, region A:149-335 [Jmol] [rasmolscript] [script source]     - Domain d7icma1, region A:9-91 [Jmol] [rasmolscript] [script source]     - Domain d7icma3, region A:92-148 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7icm_P] [7icm] [7icm_T] [7icm_A] SWISS-PROT database: [P06746] Domain organization of [DPOLB_HUMAN] by SWISSPFAM Domains found in 7ICM: [HhH1] [POLXc ] by SMART

Other resources with information on 7ICM

Community annotation for 7ICM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---