7JKV Viral Protein Inhibitor date Jul 29, 2020
title Crystal Structure Of Sars-Cov-2 Main Protease In Complex Wit Inhibitor Grl-2420
authors H.Bulut, S.I.Hattori, D.Das, K.Murayama, H.Mitsuya
compound source
Molecule: 3c-Like Proteinase
Chain: A, B
Synonym: 3cl-Pro, 3clp
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.145 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.245 99.143 58.903 90.00 107.86 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand 1PE, V7G enzyme Hydrolase E.C.3.4.22.69 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (7jkv.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 7JKV
  • CSU: Contacts of Structural Units for 7JKV
  • Structure Factors (2391 Kb)
  • Retrieve 7JKV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JKV from S2C, [Save to disk]
    • View 7JKV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JKV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jkv_A] [7jkv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JKV
  • Community annotation for 7JKV at PDBWiki (http://pdbwiki.org)

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