7JL5 Dna Binding Protein date Jul 29, 2020
title Crystal Structure Of Human Neil3 Tandem Zinc Finger Grf Doma
authors A.A.Rodriguez, J.L.Wojtaszek, R.S.Williams, B.F.Eichman
compound source
Molecule: Endonuclease 8-Like 3
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Dna Glycosylase Fpg2,Dna Glycosylaseap Lyase Neil Endonuclease Viii-Like 3,Nei-Like Protein 3;
Ec: 3.2.2.-,4.2.99.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neil3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg9
symmetry Space Group: I 4
R_factor 0.227 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.494 93.494 63.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ZN enzyme Hydrolase E.C.3.2.2 BRENDA
Primary referenceAn autoinhibitory role for the GRF zinc finger domain of DNA glycosylase NEIL3., Rodriguez AA, Wojtaszek JL, Greer BH, Haldar T, Gates KS, Williams RS, Eichman BF, J Biol Chem. 2020 Sep 2. pii: RA120.015541. doi: 10.1074/jbc.RA120.015541. PMID:32878989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (7jl5.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (7jl5.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 7JL5
  • CSU: Contacts of Structural Units for 7JL5
  • Structure Factors (129 Kb)
  • Retrieve 7JL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JL5 from S2C, [Save to disk]
  • View 7JL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7JL5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jl5_A] [7jl5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7JL5
  • Community annotation for 7JL5 at PDBWiki (http://pdbwiki.org)

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