7JNY Cytokine date Aug 05, 2020
title Crystal Structure Of Cxcl13
authors E.M.Rosenberg Jr., D.Rajasekaran, J.W.Murphy, G.Pantouris, E.J.L
compound source
Molecule: C-X-C Motif Chemokine 13
Chain: A
Synonym: Angie,B Cell-Attracting Chemokine 1,Bca-1,B Lympho Chemoattractant,Cxc Chemokine Blc,Small-Inducible Cytokine
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cxcl13, Bca1, Blc, Scyb13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.187 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.967 48.967 80.278 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.88 Å
Primary referenceThe N-terminal length and side-chain composition of CXCL13 affect crystallization, structure and functional activity., Rosenberg EM Jr, Herrington J, Rajasekaran D, Murphy JW, Pantouris G, Lolis EJ, Acta Crystallogr D Struct Biol. 2020 Oct 1;76(Pt 10):1033-1049. doi:, 10.1107/S2059798320011687. Epub 2020 Sep 25. PMID:33021505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (7jny.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 7JNY
  • Structure Factors (97 Kb)
  • Retrieve 7JNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JNY from S2C, [Save to disk]
    • View 7JNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JNY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jny_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JNY
  • Community annotation for 7JNY at PDBWiki (http://pdbwiki.org)

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