7JO9 Dna Binding Protein Dna Transferase date Aug 06, 2020
title 1:1 Cgas-Nucleosome Complex
authors J.A.Boyer, C.J.Spangler, J.D.Strauss, A.P.Cesmat, P.Liu, R.K.Mcgi Q.Zhang
compound source
Molecule: Histone H3.2
Chain: A, E
Synonym: H3-Clustered Histone 13,H3-Clustered Histone 14,H3 Histone 15,Histone H3m,Histone H3o;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3c15, Hist2h3a, H3c14, H3f2, H3fm, Hist2h3c, H3c13,
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss

Molecule: Histone H2a Type 1
Chain: C, G
Synonym: H2a.1,Histone H2aptl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2ac11, H2afp, Hist1h2ag, H2ac13, H2afc, Hist1h2ai, H H2afd, Hist1h2ak, H2ac16, H2afi, Hist1h2al, H2ac17, H2afn, Hist1h2am;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss

Molecule: Histone H2b Type 1-Cefgi
Chain: D, H
Synonym: Histone H2b.1 A,Histone H2b.A,H2ba,Histone H2b.G, Histone H2b.H,H2bh,Histone H2b.K,H2bk,Histone H2b.L,H2bl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2bc4, H2bfl, Hist1h2bc, H2bc6, H2bfh, Hist1h2be, H2b H2bfg, Hist1h2bf, H2bc8, H2bfa, Hist1h2bg, H2bc10, H2bfk, H
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss

Molecule: Dna (145-Mer)
Chain: I
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Hb101
Expression_system_taxid: 634468

Molecule: Dna (145-Mer)
Chain: J
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Hb101
Expression_system_taxid: 634468

Molecule: Cyclic Gmp-Amp Synthase
Chain: K
Synonym: M-Cgas,2'3'-Cgamp Synthase,Mab-21 Domain-Containin 1;
Ec: 2.7.7.86
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cgas, Mb21d1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand ZN enzyme Transferase E.C.2.7.7.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceStructural basis of nucleosome-dependent cGAS inhibition., Boyer JA, Spangler CJ, Strauss JD, Cesmat AP, Liu P, McGinty RK, Zhang Q, Science. 2020 Sep 10. pii: science.abd0609. doi: 10.1126/science.abd0609. PMID:32913000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (7jo9.pdb1.gz) 262 Kb
  • LPC: Ligand-Protein Contacts for 7JO9
  • CSU: Contacts of Structural Units for 7JO9
  • Retrieve 7JO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JO9 from S2C, [Save to disk]
  • View 7JO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7JO9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7jo9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jo9_D] [7jo9_J] [7jo9_A] [7jo9_K] [7jo9_H] [7jo9_C] [7jo9_F] [7jo9_B] [7jo9_I] [7jo9_E] [7jo9_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7JO9
  • Community annotation for 7JO9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science