7JOO Immune System date Aug 06, 2020
title Crystal Structure Of Icos In Complex With Antibody Stim003 A Kappa Vhh Domain
authors E.Rujas, T.Sicard, J.P.Julien
compound source
Molecule: Anti-Kappa Vhh
Chain: K
Engineered: Yes
Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

Molecule: Stim003 Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Stim003 Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Inducible T-Cell Costimulator
Chain: C
Synonym: Activation-Inducible Lymphocyte Immunomediatory Mo
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Icos, Ailim
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.855 49.031 91.817 90.00 101.90 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GOL, NAG enzyme
Primary referenceStructural characterization of the ICOS/ICOS-L immune complex reveals high molecular mimicry by therapeutic antibodies., Rujas E, Cui H, Sicard T, Semesi A, Julien JP, Nat Commun. 2020 Oct 8;11(1):5066. doi: 10.1038/s41467-020-18828-4. PMID:33033255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (7joo.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 7JOO
  • CSU: Contacts of Structural Units for 7JOO
  • Structure Factors (834 Kb)
  • Retrieve 7JOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JOO from S2C, [Save to disk]
  • View 7JOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7JOO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7joo_K] [7joo_L] [7joo_C] [7joo_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7JOO
  • Community annotation for 7JOO at PDBWiki (http://pdbwiki.org)

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