7JOY Product structure of SARS-CoV-2 Mpro C145A mutant in complex with its C-terminal autoprocessing sequence. date
authors Lee, J., Worrall, L.J., Paetzel, M., Strynadka, N.C.J.
compound source
symmetry
R_factor
R_Free 0.2520
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Primary referenceCrystallographic structure of wild-type SARS-CoV-2 main protease acyl-enzyme intermediate with physiological C-terminal autoprocessing site., Lee J, Worrall LJ, Vuckovic M, Rosell FI, Gentile F, Ton AT, Caveney NA, Ban F, Cherkasov A, Paetzel M, Strynadka NCJ, Nat Commun. 2020 Nov 18;11(1):5877. doi: 10.1038/s41467-020-19662-4. PMID:33208735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (7joy.pdb1.gz) 198 Kb
  • CSU: Contacts of Structural Units for 7JOY
  • Structure Factors (1666 Kb)
  • Retrieve 7JOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JOY from S2C, [Save to disk]
    • View 7JOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JOY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7joy from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7joy_A] [7joy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JOY
  • Community annotation for 7JOY at PDBWiki (http://pdbwiki.org)

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