7JPS Replication Dna date Aug 09, 2020
title Orc-Dna: Human Origin Recognition Complex (Orc) With Dna Bou Core
authors M.J.Jaremko, L.Joshua-Tor
compound source
Molecule: Origin Recognition Complex Subunit 1
Chain: A
Synonym: Replication Control Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc1, Orc1l, Parc1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Origin Recognition Complex Subunit 2
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc2, Orc2l
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Origin Recognition Complex Subunit 3
Chain: C
Synonym: Origin Recognition Complex Subunit Latheo
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc3, Latheo, Orc3l
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Origin Recognition Complex Subunit 4
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc4, Orc4l
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Origin Recognition Complex Subunit 5
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc5, Orc5l
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Dna (5'-D(Aptpaptpaptpaptpaptpapapt)
Chain: F
Engineered: Yes

Organism_scientific: Spodoptera Frugiperda
Organism_taxid: 7108
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Dna (5'-D(Aptptpaptpaptpaptpaptpapt)
Chain: G
Engineered: Yes

Organism_scientific: Spodoptera Frugiperda
Organism_taxid: 7108
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand ATP, K, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


D


E


Primary referenceThe dynamic nature of the human origin recognition complex revealed through five cryoEM structures., Jaremko MJ, On KF, Thomas DR, Stillman B, Joshua-Tor L, Elife. 2020 Aug 18;9. pii: 58622. doi: 10.7554/eLife.58622. PMID:32808929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (7jps.pdb1.gz) 292 Kb
  • LPC: Ligand-Protein Contacts for 7JPS
  • CSU: Contacts of Structural Units for 7JPS
  • Retrieve 7JPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JPS from S2C, [Save to disk]
  • View 7JPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7JPS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7jps from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jps_B] [7jps_C] [7jps_A] [7jps_D] [7jps_F] [7jps_G] [7jps_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7JPS
  • Community annotation for 7JPS at PDBWiki (http://pdbwiki.org)

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