7JSL Dna Binding Protein Dna date Aug 14, 2020
title Crystal Structure Of The Dna Binding Domain Of Human Transcr Factor Erf In The Oxidized Form, In Complex With Double-Str Accggaagtg
authors C.Hou, O.V.Tsodikov
compound source
Molecule: Dna (5'-D(Apcpcpgpgpapapgptpg)-3')
Chain: B, A, F, I
Engineered: Yes
Other_details: Synthetic Dna
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cpapcptptpcpcpgpgpt)-3')
Chain: C, D, G, K
Engineered: Yes
Other_details: Synthetic Dna

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ets Domain-Containing Transcription Factor Erf
Chain: J, E, H, L
Synonym: Ets2 Repressor Factor,Pe-2
Engineered: Yes
Other_details: The N-Terminal Region Gphm Is A Leftover Aft Affinity Tag Cleavage. The C-Terminal Region Klvl...Sgss Is Disordered.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: I 2 2 2
R_factor 0.224 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.537 128.464 174.914 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.51 Å
Primary referenceStructural Insight into the DNA Binding Function of Transcription Factor ERF., Hou C, McCown C, Ivanov DN, Tsodikov OV, Biochemistry. 2020 Nov 11. doi: 10.1021/acs.biochem.0c00774. PMID:33175491
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (7jsl.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (7jsl.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (7jsl.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (7jsl.pdb4.gz) 24 Kb
  • CSU: Contacts of Structural Units for 7JSL
  • Structure Factors (113 Kb)
  • Retrieve 7JSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JSL from S2C, [Save to disk]
  • View 7JSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7JSL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7jsl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jsl_K] [7jsl_F] [7jsl_H] [7jsl_C] [7jsl_E] [7jsl_D] [7jsl_J] [7jsl_I] [7jsl_B] [7jsl_A] [7jsl_G] [7jsl_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7JSL
  • Community annotation for 7JSL at PDBWiki (http://pdbwiki.org)

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