7K6S Gene Regulation date Sep 21, 2020
title Crystal Structure Of The Bromodomain (Bd) Of Human Bromodoma Finger-Containing Transcription Factor (Bptf) Bound To Comp (Skt1174)
authors A.Chan, E.Schonbrunn
compound source
Molecule: Nucleosome-Remodeling Factor Subunit Bptf
Chain: A
Synonym: Bromodomain And Phd Finger-Containing Transcriptio Fetal Alz-50 Clone 1 Protein,Fetal Alzheimer Antigen;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bptf, Fac1, Falz
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa1
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.210 27.210 37.920 90.00 96.83 90.00
method X-Ray Diffractionresolution 1.23 Å
ligand CL, EDO, GOL, VYM enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (7k6s.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 7K6S
  • CSU: Contacts of Structural Units for 7K6S
  • Structure Factors (255 Kb)
  • Retrieve 7K6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7K6S from S2C, [Save to disk]
    • View 7K6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7K6S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7k6s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7K6S
  • Community annotation for 7K6S at PDBWiki (http://pdbwiki.org)

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