7KJN Ligase Ligase Inhibitor date Oct 26, 2020
title Crystal Structure Of Human Mdmx In Complex With D-Peptide In (Dpmi-Omega)
authors W.D.Tolbert, M.Pazgier
compound source
Molecule: Protein Mdm4
Chain: A
Synonym: Double Minute 4 Protein,Mdm2-Like P53-Binding Prot Protein Mdmx,P53-Binding Protein Mdm4;
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: D-Pmi-Omega
Chain: B, C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.208 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.849 48.849 90.116 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand D0C, DAR, DGL, DLE, DLY, DPN, DTR, DTY, DVA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (7kjn.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 7KJN
  • CSU: Contacts of Structural Units for 7KJN
  • Structure Factors (69 Kb)
  • Retrieve 7KJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7KJN from S2C, [Save to disk]
  • View 7KJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7KJN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7kjn_A] [7kjn_C] [7kjn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7KJN
  • Community annotation for 7KJN at PDBWiki (http://pdbwiki.org)

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