7KT3 Replication date Nov 24, 2020
title Dna Polymerase Mu, 8-Oxodgtp:At Pre-Catalytic Ground State T Complex, 20 Mm Ca2+ (120min)
authors J.A.Jamsen, S.H.Wilson
compound source
Molecule: Dna-Directed Dnarna Polymerase Mu
Chain: A
Synonym: Pol Mu,Terminal Transferase
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polm, Polmu
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexm

Molecule: Dna (5'-D(Cpgpgpcpaptpapcpg)-3')
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Cpgptpa)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Pgpcpcpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.160 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.804 68.579 110.149 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand 8DG, CA, CL, DTT, EDO, EPE, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (7kt3.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 7KT3
  • CSU: Contacts of Structural Units for 7KT3
  • Structure Factors (924 Kb)
  • Retrieve 7KT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7KT3 from S2C, [Save to disk]
    • View 7KT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7KT3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7kt3_P] [7kt3_D] [7kt3_A] [7kt3_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7KT3
  • Community annotation for 7KT3 at PDBWiki (http://pdbwiki.org)

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