7KUF Transcription date Nov 24, 2020
title Transcription Activation Subcomplex With Whib7 Bound To Sigm Beta Flap Tip Chimera And Dna
authors T.Wan, M.Horova, D.G.Beltran, S.R.Li, L.M.Zhang
compound source
Molecule: Probable Transcriptional Regulator Whib7
Chain: A
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Atcc: 25618 H37rv
Gene: Whib7, Rv3197a, Rv3197.1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Gold)

Molecule: Rna Polymerase Sigma Factor, Dna-Directed Rna Pol Subunit Beta Chimera;
Chain: B
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Atcc: 25618 H37rv
Gene: Siga, Ers007670_01286, Ers007681_03833, Ers007688_018
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Gold)

Molecule: Dna (5'- D(Cpapgpapapapaptpcpgpgptptpgptpgpgpt)-3'
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Dna (5'- D(Gpapcpcpapcpapapcpcpgpaptptptptpcpt)-3'
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
symmetry Space Group: P 32 2 1
R_factor 0.221 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.254 69.254 167.374 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand SF4 enzyme Transferase E.C.2.7.7.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (7kuf.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 7KUF
  • CSU: Contacts of Structural Units for 7KUF
  • Structure Factors (362 Kb)
  • Retrieve 7KUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7KUF from S2C, [Save to disk]
    • View 7KUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7KUF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7kuf_B] [7kuf_C] [7kuf_A] [7kuf_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7KUF
  • Community annotation for 7KUF at PDBWiki (http://pdbwiki.org)

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