7MHO Hydrolase date Apr 15, 2021
title Ensemble Refinement Structure Of Apounliganded Sars-Cov-2 M Protease (Mpro) At 298 K
authors A.Ebrahim, B.T.Riley, D.Kumaran, B.Andi, M.R.Fuchs, S.Mcsweeney, D
compound source
Molecule: 3c-Like Proteinase
Chain: A
Synonym: 3cl-Pro,3clp,Main Protease,Mpro,Non-Structural Pro Nsp5,Sars Coronavirus Main Proteinase;
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov, Sars-Cov-2
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29b
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.968 54.622 45.194 90.00 101.67 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand DMS enzyme Hydrolase E.C.3.4.22.69 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3788 Kb) [Save to disk]
  • Biological Unit Coordinates (7mho.pdb1.gz) 368 Kb
  • LPC: Ligand-Protein Contacts for 7MHO
  • CSU: Contacts of Structural Units for 7MHO
  • Structure Factors (444 Kb)
  • Retrieve 7MHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7MHO from S2C, [Save to disk]
  • View 7MHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7MHO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7mho from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7mho_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7MHO
  • Community annotation for 7MHO at PDBWiki (http://pdbwiki.org)

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