7Q5Y Oxidoreductase date Nov 05, 2021
title Structure Of Nadh:Ubichinon Oxidoreductase (Complex I) Of Th Hyperthermophilic Eubacterium Aquifex Aeolicus
authors E.Warkentin, U.Ermler, G.Peng
compound source
Molecule: Nadh Dehydrogenase I Chain G
Chain: A, G, M, S
 Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5

Molecule: Nadh-Quinone Oxidoreductase Subunit Cd 2
Chain: B, H, N, T
Synonym: Nadh Dehydrogenase I Subunit Cd 2,Ndh-1 Subunit C
Ec: 7.1.1.-
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5

Molecule: Nadh-Quinone Oxidoreductase Subunit F
Chain: C, I, O, U
Synonym: Nadh Dehydrogenase I Subunit F,Ndh-1 Subunit F
Ec: 7.1.1.-
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5

Molecule: Nadh-Quinone Oxidoreductase Subunit I
Chain: D, J, P, V
Synonym: Nadh Dehydrogenase I Subunit I,Ndh-1 Subunit I
Ec: 7.1.1.-
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5

Molecule: Nadh-Quinone Oxidoreductase Subunit E
Chain: E, K, Q, W
Synonym: Nadh Dehydrogenase I Subunit E,Ndh-1 Subunit E
Ec: 7.1.1.-
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5

Molecule: Nadh-Quinone Oxidoreductase Subunit B
Chain: F, L, R, X
Synonym: Nadh Dehydrogenase I Subunit B,Ndh-1 Subunit B
Ec: 7.1.1.-
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5
symmetry Space Group: P 1 2 1
R_factor 0.169 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.880 240.240 230.920 90.00 95.57 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand FES, FMN, SF4 enzyme E.C.7.1.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2869 Kb) [Save to disk]
  • Biological Unit Coordinates (7q5y.pdb1.gz) 723 Kb
  • Biological Unit Coordinates (7q5y.pdb2.gz) 731 Kb
  • Biological Unit Coordinates (7q5y.pdb3.gz) 727 Kb
  • Biological Unit Coordinates (7q5y.pdb4.gz) 729 Kb
  • LPC: Ligand-Protein Contacts for 7Q5Y
  • CSU: Contacts of Structural Units for 7Q5Y
  • Structure Factors (12828 Kb)
  • Retrieve 7Q5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7Q5Y from S2C, [Save to disk]
    • View 7Q5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7Q5Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7q5y_F] [7q5y_C] [7q5y_U] [7q5y_O] [7q5y_X] [7q5y_Q] [7q5y_T] [7q5y_M] [7q5y_J] [7q5y_P] [7q5y_I] [7q5y_V] [7q5y_R] [7q5y_G] [7q5y_A] [7q5y_S] [7q5y_H] [7q5y_N] [7q5y_K] [7q5y_B] [7q5y_D] [7q5y_E] [7q5y_L] [7q5y_W]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7Q5Y
  • Community annotation for 7Q5Y at PDBWiki (http://pdbwiki.org)

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