7RT3 Hydrolase Inhibitor date Aug 12, 2021
title Crystal Structure Of Kras G12d With Compound 24 (4-(4-[(1r,5 Diazabicyclo[3.2.1]Octan-3-Yl]-8-Fluoro-2-{[(2s,4s,7ar)-2- Fluorotetrahydro-1h-Pyrrolizin-7a(5h)-Yl]Methoxy}Pyrido[4,3 D]Pyrimidin-7-Yl)Naphthalen-2-Ol) Bound
authors R.G.Gunn, N.C.Thomas, W.Xiaolun, J.D.Lawson, M.A.Marx
compound source
Molecule: Isoform 2b Of Gtpase Kras
Chain: A
Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras
Ec: 3.6.5.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kras, Kras2, Rask2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.290 53.257 88.889 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand 7NZ, GDP, MG enzyme Hydrolase E.C.3.6.5.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (7rt3.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 7RT3
  • CSU: Contacts of Structural Units for 7RT3
  • Structure Factors (732 Kb)
  • Retrieve 7RT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7RT3 from S2C, [Save to disk]
    • View 7RT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7RT3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7rt3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7RT3
  • Community annotation for 7RT3 at PDBWiki (http://pdbwiki.org)

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