7SYA Viral Protein date Nov 24, 2021
title Kinetically Trapped Pseudomonas-Phage Pap3 Portal Protein - Length
authors C.F.D.Hou, N.A.Swanson, F.Li, R.Yang, R.K.Lokareddy, G.Cingolani
compound source
Molecule: Portal Protein
Chain: a, b, c, d, e, f, g, h, I, j, k, l
Engineered: Yes
 Organism_scientific: Pseudomonas Virus Pap3
Organism_taxid: 188350
Gene: Orf4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (898 Kb) [Save to disk]
  • Biological Unit Coordinates (7sya.pdb1.gz) 887 Kb
  • CSU: Contacts of Structural Units for 7SYA
  • Retrieve 7SYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7SYA from S2C, [Save to disk]
    • View 7SYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7SYA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7sya_b] [7sya_i] [7sya_e] [7sya_f] [7sya_a] [7sya_c] [7sya_d] [7sya_k] [7sya_j] [7sya_g] [7sya_l] [7sya_h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7SYA
  • Community annotation for 7SYA at PDBWiki (http://pdbwiki.org)

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