7T5I Lyase date Dec 12, 2021
title Crystal Structure Of Strictosidine Synthase In Complex With (1h-Indol-3-Yl) Propan-1-Amine)
authors H.Liu, S.Panjikar, Y.Futamura, N.Shao, H.Osada, H.Zou
compound source
Molecule: Strictosidine Synthase
Chain: A, B
Ec: 4.3.3.2
Engineered: Yes
 Organism_scientific: Rauvolfia Serpentina
Organism_common: Serpentwood
Organism_taxid: 4060
Gene: Str1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15prep4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-2
symmetry Space Group: H 3
R_factor 0.167 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.305 150.305 121.562 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.94 Å
ligand XL4 enzyme Lyase E.C.4.3.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (7t5i.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (7t5i.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 7T5I
  • CSU: Contacts of Structural Units for 7T5I
  • Structure Factors (656 Kb)
  • Retrieve 7T5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7T5I from S2C, [Save to disk]
    • View 7T5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7T5I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7t5i_B] [7t5i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7T5I
  • Community annotation for 7T5I at PDBWiki (http://pdbwiki.org)

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